PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00931g02012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NF-YB
Protein Properties Length: 179aa    MW: 19388.6 Da    PI: 7.5074
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00931g02012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB181.19.2e-5733127195
                     NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                               vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy+eplkv
  Peinf101Scf00931g02012.1  33 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKV 117
                               69*********************************************************************************** PP

                     NF-YB  86 ylkkyreleg 95 
                               yl++yre ++
  Peinf101Scf00931g02012.1 118 YLTRYREGDT 127
                               ******9665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.8E-5429132IPR009072Histone-fold
SuperFamilySSF471131.55E-3936133IPR009072Histone-fold
PfamPF008082.2E-2839103IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.4E-216785No hitNo description
PROSITE patternPS0068507086IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.4E-2186104No hitNo description
PRINTSPR006152.4E-21105123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MADGQGSSRS PASPNGGGSH ESGGDQSPRS SNVREQDRFL PIANISRIMK KALPANGKIA  60
KDAKETVQEC VSEFISFITS EASDKCQREK RKTINGDDLL WAMATLGFED YIEPLKVYLT  120
RYREGDTKGS AKPAEGSVKR EGMQPSPGSQ LAHQGSFSQG MNYGNSQGQH MMVPMQGTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4833124192Transcription factor HapC (Eurofung)
4g92_B3e-4833124192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755218e-58HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620316.11e-123PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X3
RefseqXP_016449854.11e-123PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X1
SwissprotQ8VYK42e-89NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0V0HS791e-120A0A0V0HS79_SOLCH; Putative nuclear transcription factor Y subunit B-10-like
STRINGGLYMA03G33490.17e-99(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.39e-91nuclear factor Y, subunit B8